Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.500 Biomarker BEFREE Intellectual disability may be considered a rare feature in RTS; more study is needed. 28039508

2017

Entrez Id: 9401
Gene Symbol: RECQL4
RECQL4
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.110 Biomarker BEFREE Intellectual disability may be considered a rare feature in RTS; more study is needed. 28039508

2017

Entrez Id: 55556
Gene Symbol: ENOSF1
ENOSF1
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 Biomarker BEFREE Intellectual disability may be considered a rare feature in RTS; more study is needed. 28039508

2017

Entrez Id: 6597
Gene Symbol: SMARCA4
SMARCA4
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.150 GeneticVariation BEFREE α-Thalassemia X-linked intellectual disability (ATR-X) syndrome is a neurodevelopmental disorder caused by mutations in the ATRX gene that encodes a SNF2-type chromatin-remodeling protein. 31713968

2019

Entrez Id: 6595
Gene Symbol: SMARCA2
SMARCA2
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.140 GeneticVariation BEFREE α-Thalassemia X-linked intellectual disability (ATR-X) syndrome is a neurodevelopmental disorder caused by mutations in the ATRX gene that encodes a SNF2-type chromatin-remodeling protein. 31713968

2019

Entrez Id: 546
Gene Symbol: ATRX
ATRX
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.200 GeneticVariation BEFREE α-Thalassemia X-linked intellectual disability (ATR-X) syndrome is a neurodevelopmental disorder caused by mutations in the ATRX gene that encodes a SNF2-type chromatin-remodeling protein. 31713968

2019

Entrez Id: 4929
Gene Symbol: NR4A2
NR4A2
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.310 Biomarker GENOMICS_ENGLAND [Transudative bile peritonitis in the elderly]. 516625

1979

Entrez Id: 79649
Gene Symbol: MAP7D3
MAP7D3
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.300 Biomarker GENOMICS_ENGLAND [Research in mixed amalgam-composite restorations]. 2635020

1989

Entrez Id: 641339
Gene Symbol: ZNF674
ZNF674
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.030 Biomarker BEFREE ZNF630 is a member of the primate-specific Xp11 zinc finger gene cluster that consists of six closely related genes, of which ZNF41, ZNF81, and ZNF674 have been shown to be involved in mental retardation. 20186789

2010

Entrez Id: 347344
Gene Symbol: ZNF81
ZNF81
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.020 Biomarker BEFREE ZNF630 is a member of the primate-specific Xp11 zinc finger gene cluster that consists of six closely related genes, of which ZNF41, ZNF81, and ZNF674 have been shown to be involved in mental retardation. 20186789

2010

Entrez Id: 55733
Gene Symbol: HHAT
HHAT
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.110 Biomarker BEFREE ZNF589 belongs to KRAB-domain zinc-finger proteins previously implicated in ID, HHAT is predicted to affect sonic hedgehog, which is involved in several disorders with ID, KMT2B associated with syndromic ID fits the epigenetic module underlying the Kleefstra syndromic spectrum. 25405613

2014

Entrez Id: 9757
Gene Symbol: KMT2B
KMT2B
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.030 Biomarker BEFREE ZNF589 belongs to KRAB-domain zinc-finger proteins previously implicated in ID, HHAT is predicted to affect sonic hedgehog, which is involved in several disorders with ID, KMT2B associated with syndromic ID fits the epigenetic module underlying the Kleefstra syndromic spectrum. 25405613

2014

Entrez Id: 11278
Gene Symbol: KLF12
KLF12
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE ZNF462 and KLF12 are disrupted by a de novo translocation in a patient with syndromic intellectual disability and autism spectrum disorder. 29427787

2018

Entrez Id: 414
Gene Symbol: ARSD
ARSD
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.100 AlteredExpression BEFREE Youth with ASD without co-occurring intellectual disability experience high levels of intolerance of uncertainty (IU), which is related to anxiety. 29316350

2018

Entrez Id: 22871
Gene Symbol: NLGN1
NLGN1
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 Biomarker BEFREE Yet since NLGN1 is involved in synaptogenesis in the central nervous system, altered gene dosage is a good candidate for mental retardation as a recurrent feature of dup(3q) syndrome. 15551338

2005

Entrez Id: 6658
Gene Symbol: SOX3
SOX3
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.200 Biomarker BEFREE Xq27.1 duplication encompassing SOX3 has been implicated in the aetiology of X-linked hypopituitarism associated with intellectual disability and neural tube defects. 31678974

2019

Entrez Id: 10735
Gene Symbol: STAG2
STAG2
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.330 GeneticVariation BEFREE Xq25 duplications encompassing GRIA3 and STAG2 genes in two families convey recognizable X-linked intellectual disability with distinctive facial appearance. 23637084

2013

Entrez Id: 2892
Gene Symbol: GRIA3
GRIA3
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.190 GeneticVariation BEFREE Xq25 duplications encompassing GRIA3 and STAG2 genes in two families convey recognizable X-linked intellectual disability with distinctive facial appearance. 23637084

2013

Entrez Id: 2182
Gene Symbol: ACSL4
ACSL4
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.160 GeneticVariation BEFREE Xq22.3-q23 deletion including ACSL4 in a patient with intellectual disability. 23520119

2013

Entrez Id: 412
Gene Symbol: STS
STS
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.190 GeneticVariation BEFREE Xp22.3 interstitial deletion: a recognizable chromosomal abnormality encompassing VCX3A and STS genes in a patient with X-linked ichthyosis and mental retardation. 23791652

2013

Entrez Id: 51481
Gene Symbol: VCX3A
VCX3A
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.090 GeneticVariation BEFREE Xp22.3 interstitial deletion: a recognizable chromosomal abnormality encompassing VCX3A and STS genes in a patient with X-linked ichthyosis and mental retardation. 23791652

2013

Entrez Id: 4412
Gene Symbol: MRX49
MRX49
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.030 GeneticVariation BEFREE Xp22.3 deletion in males can be associated with short stature (SHOX), chondrodysplasia punctata (ARSE), mental retardation (MRX49 locus), ichthyosis (STS), Kallmann syndrome (KAL1) and ocular albinism (OA1), according to the size of the deletion. 18194880

2008

Entrez Id: 6594
Gene Symbol: SMARCA1
SMARCA1
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.100 Biomarker BEFREE X-linked α-thalassemia with mental retardation (ATRX) is a chromatin remodeling protein that belongs to the SWItch/sucrose non-fermentable (SWI2/SNF2) family of helicase/ATPases. 30649195

2019

Entrez Id: 6597
Gene Symbol: SMARCA4
SMARCA4
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.150 Biomarker BEFREE X-linked α-thalassemia with mental retardation (ATRX) is a chromatin remodeling protein that belongs to the SWItch/sucrose non-fermentable (SWI2/SNF2) family of helicase/ATPases. 30649195

2019

Entrez Id: 6595
Gene Symbol: SMARCA2
SMARCA2
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.140 Biomarker BEFREE X-linked α-thalassemia with mental retardation (ATRX) is a chromatin remodeling protein that belongs to the SWItch/sucrose non-fermentable (SWI2/SNF2) family of helicase/ATPases. 30649195

2019